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Select the fields you want to have in the exported tab-delimited file. The fields can be re-ordered by dragging the handle icon () to another position.

  
 
 
 
 
  • title

    Title of the study.

  • study description

    Description of the study.

  • study status

    Current status of the project.

  • ispublic

    Visibility scope for the project

  • publication

    Reference to related publication(s).

  • geo sra id

    Sequence identifiers in external repositories.

  • animalid

    Animal ID in external databases.

  • breed en

    Animal breed from where the sample was collected.

  • breed variant en

    Breed variant of the animal from where the sample was collected.

  • sex

    Sex of the animal from where the sample was collected.

  • age

    Age of the animal in months.

  • steril castr

    Sterilization/Castration status of the animal from where the sample was collected.

  • subject extra info

    Additional information about the animal from where the sample was collected.

  • biosample set

    The experimental set in which the sample was used.

  • animalsampleid

    The ID of the collected specimen in the database.

  • anatomical region

    The ontology term describing the anatomical region from where the specimen was taken.

  • organ system

    The ontology term describing the organ system from where the specimen was taken.

  • term

    The ontology term describing the specimen that was taken.

  • subterm

    A more specific ontological term describing the specimen that was taken.

  • specific term

    Another more specific term for disambiguation related to the speciment that was taken.

  • treatment

    In a treatment/control setup this is the treatment applied to the sample.

  • bioanalyzerid

    The ID referencing the sample in the Bioanalyzer report file.

  • extraction date

    The date in which of the specimen was taken.

  • stock conc nd

    The concentration of the RNA extract measured by NanoDrop.

  • stock conc qubit

    The concentration of the RNA extract measured by Qubit.

  • tissue amount

    The amount of sample processed during RNA extraction.

  • sample vol

    The volume of sample processed durng RNA extraction.

  • rna amount

    The amount of RNA obtained.

  • isolation method

    The method used for RNA extraction.

  • rin

    The RIN value for the RNA extract.

  • a260 a230

    Coefficient of purity A260/A230.

  • rnaboxid

    The box ID where the RNA extract is stored.

  • boxslot

    The position inside the box where the RNA extract is stored.

  • rna extra info

    Additional information about the RNA extract.

  • seqid

    The ID of the related sequencing record.

  • seq externalid

    The ID assigned by the sequencing lab.

  • pool name

    The name of the pool for CAGE sequencing.

  • pool number

    The number of the pool for CAGE sequencing.

  • techid

    The id given by the CAGE or STRT2 randomization process.

  • platform

    Platform used for the sequencing.

  • instrument

    Instrument used for sequencing.

  • paired end

    A Yes/No value indicating if both ends of the fragment was sequenced.

  • seq date

    The date when the sample was sequenced.

  • strand mode

    The strand sequencing mode.

  • max read length

    The maximum read length.

  • chemistry version

    The chemistry version.

  • extra info

    Additional information about the sequencing.

  • dataid

    The ID of the related sequencing data record.

  • file type

    The type of the file associated with the sequence.

  • primary file name

    The primary sequencing file name.

  • primary file sha1

    The primary sequencing file SHA1 code.

  • primary file url

    The URL of the primary sequencing file.

  • secondary file name

    The secondary sequencing file name.

  • secondary file sha1

    The secondary sequencing file SHA1 code.

  • secondary file url

    The URL of the secondary sequencing file.

  • derived from

    The ID of the record from where this data was derived.

  • mapped genome

    The mapped genome.

  • command

    The command used for processing.

  • freeze version

    The freeze version to which this piece of data belongs.

  • seq data extra info

    Additional information about the sequencing data.

  • dataqcid

    The ID of the related sequencing quality data parameter record.

  • qc externalid

    The ID assigned by the sequencing lab.

  • bc reads

    The number of barcoded reads.

  • spikein mapped reads

    The number of mapped spike-in reads.

  • spikein mapped perc

    The percentage of mapped spike-in reads.

  • canine mapped reads

    The number of reads mapped to the canine genome.

  • canine mapped perc

    The percentage of reads mapped to the canine genome.

  • unmapped reads perc

    The percentage of unmapped reads.

  • redundancy reads

    The number of redundancy reads.

  • redundancy perc

    The percentage of redundancy reads.

  • qc extra info

    Additional information about the quality control parameters.